IthaID: 2802



Names and Sequences

Functionality: Disease modifying mutation Pathogenicity: N/A
Common Name: rs2855126 HGVS Name: NG_000007.3:g.45699G>C

Context nucleotide sequence:
GAAGAAAGAGAAAAAAATAAGCTTC [C/G] GTGTTCAGTGGATTAGAAACCATGT (Strand: -)

Also known as:

Comments: Associated with HbF levels in the general (non-anaemic) population of Sardinia (n=4305). Associated with HbF levels and disease severity in patients from Thailand with HbE/β0-thalassemia. Associated with higher levels of serum uric acid in African Americans (n=1976).

We follow the HGVS sequence variant nomenclature and IUPAC standards.

External Links

Phenotype

Allele Phenotype (Cis):N/A
Allele Phenotype (Trans):N/A
Associated Phenotypes: Hb F levels [HP:0011904] [OMIM:141749]
Hyperuricemia [HP:0002149]
Severity [HP:0012824]

Location

Chromosome: 11
Locus: NG_000007.3
Locus Location: 45699
Size: 1 bp
Located at: HBG1-HBG2
Specific Location: N/A

Other details

Type of Mutation: Point-Mutation(Substitution)
Effect on Gene/Protein Function: N/A
Ethnic Origin: Thai, Sardinian, African American
Molecular mechanism: N/A
Inheritance: Quantitative trait
DNA Sequence Determined: Yes

In silico pathogenicity prediction

Sequence Viewer

Note: The NCBI Sequence Viewer is not installed on the ITHANET servers but it is embedded in this page from the NCBI. Therefore, IthaGenes has no responsibility over any temporary unavailability of the service. In such a case, please Refresh the page or retry at a later stage. Otherwise, use this external link.

Publications / Origin

  1. Uda M, Galanello R, Sanna S, Lettre G, Sankaran VG, Chen W, Usala G, Busonero F, Maschio A, Albai G, Piras MG, Sestu N, Lai S, Dei M, Mulas A, Crisponi L, Naitza S, Asunis I, Deiana M, Nagaraja R, Perseu L, Satta S, Cipollina MD, Sollaino C, Moi P, Hirschhorn JN, Orkin SH, Abecasis GR, Schlessinger D, Cao A, Genome-wide association study shows BCL11A associated with persistent fetal hemoglobin and amelioration of the phenotype of beta-thalassemia., Proc. Natl. Acad. Sci. U.S.A. , 105(5), 1620-5, 2008 PubMed
  2. Sherva R, Sripichai O, Abel K, Ma Q, Whitacre J, Angkachatchai V, Makarasara W, Winichagoon P, Svasti S, Fucharoen S, Braun A, Farrer LA, Genetic modifiers of Hb E/beta0 thalassemia identified by a two-stage genome-wide association study., BMC Med. Genet. , 11(0), 51, 2010 PubMed
  3. Shriner D, Kumkhaek C, Doumatey AP, Chen G, Bentley AR, Charles BA, Zhou J, Adeyemo A, Rodgers GP, Rotimi CN, Evolutionary context for the association of γ-globin, serum uric acid, and hypertension in African Americans., BMC Med. Genet. , 16(0), 103, 2015 PubMed
Created on 2016-05-16 18:36:20, Last reviewed on 2021-07-08 16:32:30 (Show full history)

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