IthaID: 3203
Names and Sequences
Functionality: | Disease modifying mutation | Pathogenicity: | N/A |
---|---|---|---|
Common Name: | rs1042711 | HGVS Name: | NG_016421.1:g.5193C>T |
We follow the
HGVS sequence variant nomenclature
and
IUPAC standards.
Context nucleotide sequence:
CGCAGAGCCCCGCCGTGGGTCCGCC [C/T] GCTGAGGCGCCCCCAGCCAGTGCGC (Strand: +)
Comments: SNP associated with chronic pain in sickle cell disease. SNP was found to be in a linkage disequilibrium block in the studied cohort.
External Links
Phenotype
Allele Phenotype (Cis): | N/A |
---|---|
Allele Phenotype (Trans): | N/A |
Associated Phenotypes: | Pain [HP:0012531] |
Location
Chromosome: | 5 |
---|---|
Locus: | NG_016421.1 |
Locus Location: | 5193 |
Size: | 1 bp |
Located at: | ADRB2 |
Specific Location: | 5'UTR |
Other details
Type of Mutation: | Point-Mutation(Substitution) |
---|---|
Effect on Gene/Protein Function: | N/A |
Ethnic Origin: | N/A |
Molecular mechanism: | N/A |
Inheritance: | Quantitative trait |
DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Sequence Viewer
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Publications / Origin
- Jhun E, He Y, Yao Y, Wilkie D, Molokie R, Wang J, (283) Beta2-adrenergic receptor gene polymorphisms and haplotypes associate with chronic pain in sickle cell disease., J Pain , 17(4), S46-S47, 2016 PubMed
Created on 2017-02-28 13:25:34,
Last reviewed on (Show full history)
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