IthaID: 3285
Names and Sequences
| Functionality: | Disease modifying mutation | Pathogenicity: | N/A |
|---|---|---|---|
| Common Name: | rs11759328 | HGVS Name: | NC_000006.12:g.129691228C>T |
Context nucleotide sequence:
CAACATAAACACACACTTTCCCTAA [C/T] CTTATGCCTTGATAAAGACTACACA (Strand: +)
Also known as:
Comments: SNP associated with increased HbF levels in a Chinese cohort of patients with β-thalassaemia, as well as in Thai cohort with heterozygous and homozygous haemoglobin E (HbE).
We follow the HGVS sequence variant nomenclature and IUPAC standards.
External Links
Phenotype
| Allele Phenotype (Cis): | N/A |
|---|---|
| Allele Phenotype (Trans): | N/A |
| Associated Phenotypes: | Hb F levels [HP:0011904] [OMIM:141749] |
Other details
| Type of Mutation: | Point-Mutation(Substitution) |
|---|---|
| Effect on Gene/Protein Function: | N/A |
| Ethnic Origin: | Chinese, Thai |
| Molecular mechanism: | N/A |
| Inheritance: | Quantitative trait |
| DNA Sequence Determined: | Yes |
In silico pathogenicity prediction
Note:
The impact thresholds provided in this section are based on the analyses performed in Tamana et.al. For any given tool, the impact thresholds defined for the set of variants with the same effect on function as the variant examined, are preferred over those defined for the full dataset.
Sequence Viewer
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Publications / Origin
- He Y, Luo J, Chen Y, Zhou X, Yu S, Jin L, Xiao X, Jia S, Liu Q, ARHGAP18 is a novel gene under positive natural selection that influences HbF levels in β-thalassaemia., Mol. Genet. Genomics , 2017 PubMed
- Jomoui W, Tepakhan W, Yamsri S, Srivorakun H, Fucharoen G, Fucharoen S, A novel SNP rs11759328 on Rho GTPase-activating protein 18 gene is associated with the expression of Hb F in hemoglobin E-related disorders., Ann. Hematol., 99(1), 23-29, 2020 PubMed
Created on 2017-12-14 17:35:21,
Last reviewed on 2020-07-02 09:12:22 (Show full history)
| A/A | Date | Curator(s) | Comments |
|---|---|---|---|
| 1 | 2017-12-14 17:35:21 | The IthaGenes Curation Team | Created |
| 2 | 2020-07-02 09:12:22 | The IthaGenes Curation Team | Reviewed. Reference added. Comment updated. |
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IthaGenes was last updated on 2024-04-18 10:10:45